| Place | Performance | Athlete | Team |
| 1 | 04:15.75 | MAKOLE - KANANELO | CURRO HAZELDEAN |
| 2 | 04:19.27 | KEKANA - THETO | CURRO HAZELDEAN |
| 3 | 04:28.81 | MUSLIM - ZUNAID | PRETORIA BOYS HIGH SCHOOL B |
| 4 | 04:31.64 | ROSSER - KEANE | FAIRMONT HIGH SCHOOL |
| 5 | 04:33.52 | DIAB - MARTIN | PAUL ROOS GIMNASIUM A |
| 6 | 04:37.50 | JOUBERT - JUAN | ELDORAIGNE HORSKOOL |
| 7 | 04:39.11 | GRAY - LANCE | PRETORIA BOYS HIGH SCHOOL A |
| 8 | 04:41.33 | BOTHA - WILLEM | HOR LANDBOUSKOOL BOLAND |
| 9 | 04:43.76 | SPIES - PIERRE | OUTENIQUA |
| 10 | 04:48.51 | WHITE - INGU | PAARL BOYS HIGH C |
| 11 | 04:49.14 | WHITEHEAD - CHARL | PAUL ROOS GIMNASIUM B |
| 12 | 04:49.61 | SHARE - RUAN | OUTENIQUA |