| Place | Performance | Athlete | Team |
| 1 | 3:44.85 | MTSHILITA - KHAZIMLA | EASTERN CAPE |
| 2 | 3:45.11 | PIETROIUSTI - MATTHEW | GAUTENG |
| 3 | 3:45.27 | DUBULA - PHIWOKUHLE | EASTERN CAPE |
| 4 | 3:45.98 | BOTHA - ARMAND | GAUTENG |
| 5 | 3:48.07 | VAN DER LEEK - M | GAUTENG |
| 6 | 3:55.40 | SITHETHO - THABISO | EASTERN CAPE |
| 7 | 3:56.94 | MBHELE - SLINDELO | KWAZULU-NATAL |
| 8 | 3:57.31 | MKHIZE - EZEKHETHELO | KWAZULU-NATAL |
| 9 | 3:58.99 | MONYAKI - TIISETSO | FREESTATE |
| 10 | 3:59.43 | HATTINGH - TEDRICH | NORTHWEST PROVINCE |
| 11 | 4:07.25 | KHOZA - APHIWE | KWAZULU-NATAL |
| 12 | 4:08.44 | CUINHANE - MIGUEL BLESSING | MPUMALANGA |
| 13 | 4:18.27 | DONCABE - SIYABONGA | KWAZULU-NATAL |