| Place | Performance | Athlete | Team |
| 1 | 04:35.44 | TIBANA - ZECA | VORENTOE BOYS |
| 2 | 04:40.25 | MOTHAE - NEO | VORENTOE BOYS |
| 3 | 04:46.18 | MBELEKI - APHIWE | CURRO HAZELDEAN WHITE BOYS |
| 4 | 04:47.90 | TITUS - CIANO | PRETORIA BOYS HIGH A |
| 5 | 04:57.55 | FOURIE - DEAN | MIDSTREAM BOYS |
| 6 | 04:58.56 | LE ROUX - BRENNAN | RANDBURG SEUNS |
| 7 | 05:00.05 | VISSER - LIAM | RANDBURG SEUNS |
| 8 | 05:01.66 | KOEN - LEROY | TRANSVALIA |
| 9 | 05:05.10 | ESTERHUIZEN - DANIEL | OOS-MOOT SEUNS |
| 10 | 05:07.79 | STOLTZ - LEON | MENLOPARK SEUNS B |
| 11 | 05:08.69 | NKOSINDANA - SBUSISO | CURRO HAZELDEAN WHITE BOYS |
| 12 | 05:09.33 | SCHWULST - LUKE | MENLOPARK SEUNS B |
| 13 | 05:22.59 | MULLER - WIAN | GOING4GOLD BOYS A TEAM |
| 14 | 05:28.46 | VAN DRIEL - OTTO | PRETORIA BOYS HIGH B |
| 15 | 05:42.68 | NOTHNAGEL - DE VILLIERS | BOLAND LANDBOU |