| Place | Performance | Athlete | Team |
| 1 | 03:47.38 | NCAMANE - JABOLANE | MASAI AC |
| 2 | 03:50.66 | CHOBA - ABEDINICO | TUKS |
| 3 | 03:53.02 | NWAGU - TSHEGOFATSO DAVID | TSHWANE UNIVERSITY OF TECHNOLOGY |
| 4 | 03:53.97 | BUCARIZZA - MARKO | BORN 2 RUN |
| 5 | 04:01.57 | SEGALAGALA - TEBOGO | BOXER ATHLETICS |
| 6 | 04:01.63 | MOKUBUNG - PASEKA | TSHWANE UNIVERSITY OF TECHNOLOGY |
| 7 | 04:02.22 | CHOKOE - LESIBA | TSHWANE UNIVERSITY OF TECHNOLOGY |
| 8 | 04:02.58 | KEKANA - MILTON | TSHWANE UNIVERSITY OF TECHNOLOGY |
| 9 | 04:04.88 | BEUKES - CALEB | BOXER ATHLETICS |
| 10 | 04:11.85 | SWANEPOEL - GERHARD | TUKS |
| 11 | 04:13.39 | MAUTJANA - TUMISHO | DANVILLE DEVELOPEMENT AC |
| 12 | 04:13.82 | SEHEMO - DANNYBOY | TSHWANE UNIVERSITY OF TECHNOLOGY |
| 13 | 04:15.72 | MOGALE - ORATILE | TSHWANE UNIVERSITY OF TECHNOLOGY |
| 14 | 04:16.73 | MOTAUNG - MPHO | TSHWANE UNIVERSITY OF TECHNOLOGY |
| 15 | 04:18.87 | JACOBS - RUAN | ENTSIKA |
| 16 | 04:22.90 | KRETZINGER - DALE | BORN 2 RUN |
| 17 | 04:24.78 | SITHOLE - SIBUSISO | INDIVIDUAL |