| Place | Performance | Athlete | Team |
| 1 | 03:46.65 | MOHMOMOAWA - ELVIS | UJ A |
| 2 | 03:46.96 | SIBIYA - NKOSINATHI | UJ A |
| 3 | 03:47.49 | MUNNIK - LUAN | NWU EAGLES A |
| 4 | 03:49.84 | MOTSAU - JERRY | NWU EAGLES A |
| 5 | 03:53.44 | JONCK - RUAN | UFS A |
| 6 | 03:54.06 | PHEKO - KHOTSOFALO TSEGOFATSO | TUKS B |
| 7 | 03:57.62 | BOTLHOLO - SOLOMON | TUT A |
| 8 | 03:57.73 | BROWN - JUSTIN | UJ B |
| 9 | 04:03.73 | TSOTETSI - LEBOHANG ADAM | UFS A |
| 10 | 04:05.17 | SIYABONGA - MOKGOTHU | UJ B |
| 11 | 04:05.65 | COLEMAN - LLEWELLYN | UFS A |
| 12 | 04:15.71 | GUMEDE - SERAME | VUT A |
| 13 | 04:15.84 | MDI - ANDILE | CENTRAL UNIV OF TECH |
| 14 | 04:18.72 | NDLOVU - NHLOSO | UFS A |
| 15 | 04:19.38 | MOSOEU - TANKI | CENTRAL UNIV OF TECH |
| 16 | 04:29.63 | MOLOKOMME - THABISO | LIMPOPO UNIV |
| 17 | 04:30.10 | MBONAMI - THABISO | LIMPOPO UNIV |
| 18 | 04:33.10 | MADWABELA - SONGEZO | FORT HARE UNIV |
| 19 | 04:34.01 | BLAAW - ROSHEN | UWC A |
| 20 | 04:37.46 | NEELS - JASON | UWC A |
| 21 | 04:37.84 | DLUME - LUSANDA | FORT HARE UNIV |
| 22 | 04:41.63 | MOSIA - POLOKO | CENTRAL UNIV OF TECH |
| 23 | 04:43.06 | PHUTIEAGAE - THABANG | VUT A |
| 24 | 04:45.86 | MABANGA - LINDA | TUT A |