| Place | Performance | Athlete | Team |
| 1 | 0:45.27 | NZAMANI - DITIRO | BOTSWANA |
| 2 | 0:45.55 | PILLAY - LYTHE | CENTRAL GAUTENG ATHLETICS |
| 3 | 0:45.78 | NENE - ZAKITHI | FAST FEET AC |
| 4 | 0:46.82 | HLUNGWANI - ASHLEY | MASAI AC |
| 4 | 0:46.82 | MAKWALA - ISAAC | BOTSWANA |
| 6 | 0:46.95 | DIKGALE - RANTI | BACKTRACK |
| 7 | 0:47.14 | KOEKEMOER - BAREND | TUKS |
| 8 | 0:47.34 | MAVUNDLA - OSCAR | TUT |
| 9 | 0:47.67 | CONRADIE - PIETER | NORTHWEST UNIVERSITY |
| 10 | 0:47.88 | UKONA - KHUZWAYO | MASAI AC |
| 11 | 0:48.09 | CUOTO - KURT | MOZAMBIQUE |
| 12 | 0:49.55 | SIYBONGA - UZOHO | COOL RUNNINGS |
| 13 | 0:49.60 | NEO - HLALUKANE | COOL RUNNINGS |