| Place | Performance | Athlete | Team |
| 1 | 04:13.79 | Q: ZINXUNGE - SANELE | TUKS |
| 2 | 04:14.61 | Q: MOTLHABEDI - KARABELO | TUKS |
| 3 | 04:15.35 | Q: JANSEN VAN VUUREN - JOHAN | BACKTRACK |
| 4 | 04:15.78 | Q: SEGWATLHA - MORAPELENG | TUKS |
| 5 | 04:16.58 | Q: MATHEBULA - VIWE | TUKS |
| 6 | 04:16.92 | Q: MARAIS - ALWYN | WATERKLOOF |
| 7 | 04:18.88 | q: SKOSANA - NKOSINATHI | TUKS |
| 8 | 04:20.63 | q: MULLER - HEINRICH | AFFIES SEUNS |
| 9 | 04:21.81 | -: DE VILLIERS - NICO | GARSFONTEIN |
| 10 | 04:40.80 | -: ENDRODY-YOUNGA - MATTHEW | AFFIES SEUNS |
| 11 | 04:42.55 | -: VON WESTERHAGEN - GUSTAV | MIDSTREAM COLLEGE |